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Large-scale machine learning for metagenomics sequence classification
Kevin Vervier
,
Pierre Mahé
,
Maud Tourmoud
,
Jean-Baptiste Veyrieras
,
Jean-Philippe Vert
Bioinformatics, 2016, 32 (7), pp.1023-32
Journal articles
hal-01420829v1
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Contribution of epigenetic landscapes and transcription factors to X-chromosome reactivation in the inner cell mass
Maud Borensztein
,
Ikuhiro Okamoto
,
Laurène Syx
,
Guillaume Guilbaud
,
Christel Picard
,
et al.
Journal articles
hal-03437406v1
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Dimeric G-quadruplex motifs determine a large fraction of strong replication origins in vertebrates
Jérémy Poulet-Benedetti
,
Caroline Tonnerre-Doncarli
,
Anne-Laure Valton
,
Marc Laurent
,
Marie Gérard
,
et al.
Journal articles
hal-03932439v1
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Prognosis and chemosensitivity of non-V600E BRAF mutations in metastatic colorectal carcinoma (mCRC): An AGEO French multicenter retrospective cohort.
Aline Derosiere
,
Vincent Nicolai
,
David Malka
,
Astrid Pozet
,
Julien Lazartigues
,
et al.
Journal articles
hal-03606012v1
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The Kendall and Mallows Kernels for Permutations
Yunlong Jiao
,
Jean-Philippe Vert
Journal articles
hal-01679012v1
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Nuclei segmentation in histopathology images using deep neural networks
Peter Naylor
,
Marik Laé
,
Fabien Reyal
,
Thomas Walter
2017 IEEE 14th International Symposium on Biomedical Imaging (ISBI 2017), 2017, Melbourne, Australia
Conference papers
hal-01683969v1
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Autoimmunity affecting the biliary tract fuels the immunosurveillance of cholangiocarcinoma
Juliette Paillet
,
Céleste Plantureux
,
Sarah Lévesque
,
Julie Le Naour
,
Gautier Stoll
,
et al.
Journal articles
hal-03378827v1
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Molecular profiling of non-small-cell lung cancer patients with or without brain metastases included in the randomized SAFIR02-LUNG trial and association with intracranial outcome
Alice Mogenet
,
Fabrice Barlesi
,
Benjamin Besse
,
Stefan Michiels
,
Maryam Karimi
,
et al.
Journal articles
hal-03925563v1
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A generic methodological framework for studying single cell motility in high-throughput time-lapse data
Alice Schoenauer Sebag
,
Sandra Plancade
,
Céline Raulet-Tomkiewicz
,
Robert Barouki
,
Jean-Philippe Vert
,
et al.
Journal articles
hal-01246689v1
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Learning with Minimal Effort: Leveraging in Silico Labeling for Cell and Nucleus Segmentation
Thomas Bonte
,
Maxence Philbert
,
Emeline Coleno
,
Edouard Bertrand
,
Arthur Imbert
,
et al.
ECCV 2022 Workshops. Lecture Notes in Computer Science, 13804, Springer Nature Switzerland, pp.423-436, 2023, Lecture Notes in Computer Science, 978-3-031-25068-2. ⟨10.1007/978-3-031-25069-9_28⟩
Proceedings
hal-04029154v1
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Jarid2 Methylation via the PRC2 Complex Regulates H3K27me3 Deposition during Cell Differentiation.
Serena Sanulli
,
Neil Justin
,
Aurélie Teissandier
,
Katia Ancelin
,
Manuela Portoso
,
et al.
Journal articles
hal-01110498v1
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Addressing barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biology
Anna Niarakis
,
Dagmar Waltemath
,
James Glazier
,
Falk Schreiber
,
Sarah Keating
,
et al.
Journal articles
hal-03690604v1
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Efficient multi-task chemogenomics for drug specificity prediction
Benoit Playe
,
Chloé-Agathe Azencott
,
Véronique Stoven
Journal articles
hal-01984828v1
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A general and flexible method for signal extraction from single-cell RNA-seq data
Davide Risso
,
Fanny Perraudeau
,
Svetlana Gribkova
,
Sandrine Dudoit
,
Jean-Philippe Vert
Nature Communications, 2018, 9 (1)
Journal articles
hal-01985432v1
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Segmentation of Nuclei in Histopathology Images by deep regression of the distance map
Peter Naylor
,
Marick Lae
,
Fabien Reyal
,
Thomas Walter
IEEE Transactions on Medical Imaging, 2018, pp.1-12
Journal articles
hal-01984033v1
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Endoscopic management of 345 small rectal neuroendocrine tumours: A national study from the French group of endocrine tumours (GTE)
Caroline Fine
,
Guillaume Roquin
,
Eric Terrebonne
,
Thierry Lecomte
,
Romain Coriat
,
et al.
Journal articles
hal-02549178v1
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Telomere length, ATM mutation status and cancer risk in Ataxia-Telangiectasia families
Anne Laure Renault
,
Noura Mebirouk
,
Eve Cavaciuti
,
Dorothée Le Gal
,
J. Lecarpentier
,
et al.
Journal articles
hal-01658591v1
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Classification of gene signatures for their information value and functional redundancy
Laura Cantini
,
Laurence Calzone
,
Loredana Martignetti
,
Mattias Rydenfelt
,
Nils Blüthgen
,
et al.
Journal articles
hal-02129604v1
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A Deep Learning Approach To Identify MRNA Localization Patterns
Rémy Dubois
,
Arthur Imbert
,
Aubin Samacoits
,
Marion Peter
,
Edouard Bertrand
,
et al.
2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI), Apr 2019, Venice, France. pp.1386-1390, ⟨10.1109/ISBI.2019.8759235⟩
Conference papers
hal-02343547v1
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Jointly Embedding Multiple Single-Cell Omics Measurements
Jie Liu
,
Yuanhao Huang
,
Ritambhara Singh
,
Jean-Philippe Vert
,
William Stafford Noble
Journal articles
hal-02444746v1
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Designs for evaluating precision medicine trials
Xavier Paoletti
,
Bernard Asselain
,
Christophe Le Tourneau
Pan-cancer Integrative Molecular Portrait Towards a New Paradigm in Precision Medicine, pp.113-131, 2015, 9783319221892. ⟨10.1007/978-3-319-22189-2_8⟩
Book sections
hal-02560954v1
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Urinary Exosomes of Patients with Cystic Fibrosis Unravel CFTR-Related Renal Disease
Sebastien Gauthier
,
Iwona Pranke
,
Vincent Jung
,
Loredana Martignetti
,
Véronique Stoven
,
et al.
Journal articles
hal-03116838v1
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martini: an R package for genome-wide association studies using SNP networks
Chloé-Agathe Azencott
,
Héctor Climente-González
2021
Preprints, Working Papers, ...
hal-03122108v1
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Pembrolizumab for the treatment of programmed death–ligand 1‒positive advanced carcinoid or pancreatic neuroendocrine tumors: Results from the KEYNOTE-028 study
Janice M. Mehnert
,
Emily K. Bergsland
,
Bert H. O’neil
,
Armando Santoro
,
Jan H.M. Schellens
,
et al.
Journal articles
hal-02927423v1
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A comparison of phase I dose-finding designs in clinical trials with monotonicity assumption violation
Rachid Abbas
,
Caroline Rossoni
,
Thomas F. Jaki
,
Xavier Paoletti
,
Pavel Mozgunov
Journal articles
hal-02984267v1
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Origin, Analytical Characterization, and Use of Human Odor in Forensics
Vincent Cuzuel
,
Guillaume Cognon
,
Isabelle Rivals
,
Charles Sauleau
,
François Heulard
,
et al.
Journal articles
halshs-02524960v1
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The inconvenience of data of convenience: computational research beyond post-mortem analyses
Chloé-Agathe Azencott
,
Tero Aittokallio
,
Sushmita Roy
,
Ankit Agrawal
,
Emmanuel Barillot
,
et al.
Journal articles
hal-01679028v1
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DNA methylation and hydroxymethylation characterize the identity of D1 and D2 striatal projection neurons
Lucile Marion-Poll
,
Jean-Pierre Roussarie
,
Lieng Taing
,
Cloelia Dard-Dascot
,
Nicolas Servant
,
et al.
Journal articles
hal-03939291v1
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Exploring isofunctional molecules: design of a benchmark and evaluation of prediction performance
Philippe Pinel
,
Gwenn Guichaoua
,
Matthieu Najm
,
Stéphanie Labouille
,
Nicolas Drizard
,
et al.
Journal articles
hal-03938203v1
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Differential CFTR-Interactome Proximity Labeling Procedures Identify Enrichment in Multiple SLC Transporters
Benoît Chevalier
,
Nesrine Baatallah
,
Matthieu Najm
,
Solène Castanier
,
Vincent Jung
,
et al.
Journal articles
hal-03940119v1
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