Stability-based comparison of class discovery methods for DNA copy number profiles.
Isabel Brito
,
Philippe Hupé
,
Pierre Neuvial
,
Emmanuel Barillot
PLoS ONE , 2012, 8 (12), pp.e81458
Journal articles
hal-01201580v1
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A new pairwise kernel for biological network inference with support vector machines.
Jean-Philippe Vert
,
Jian Qiu
,
William S Noble
Journal articles
hal-00433573v1
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Supervised reconstruction of biological networks with local models.
Kevin Bleakley
,
Gérard Biau
,
Jean-Philippe Vert
Journal articles
hal-00433575v1
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Classification of microarray data using gene networks.
Franck Rapaport
,
Andrei Zinovyev
,
Marie Dutreix
,
Emmanuel Barillot
,
Jean-Philippe Vert
Journal articles
hal-00433577v1
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An accurate and interpretable model for siRNA efficacy prediction.
Jean-Philippe Vert
,
Nicolas Foveau
,
Christian Lajaunie
,
Yves Vandenbrouck
Journal articles
hal-00433579v1
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Three-dimensional modeling of the P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression
Ferhat Ay
,
Evelien M. Bunnik
,
Nelle Varoquaux
,
Sebastiaan M. Bol
,
Jacques Prudhomme
,
et al.
Journal articles
hal-01101873v1
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A community effort to assess and improve drug sensitivity prediction algorithms
James C Costello
,
Laura M Heiser
,
Elisabeth Georgii
,
Mehmet Gönen
,
Michael P Menden
,
et al.
Journal articles
hal-01101874v1
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Proceedings of the 7th European Conference on Python in Science (EuroSciPy 2014)
Pierre de Buyl
,
Nelle Varoquaux
2014
Books
hal-01584599v1
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Integrative approaches for the identification of therapeutic targets in basal-like breast cancer from multi-level molecular data
B. M. Tesson
,
Guillem Rigaill
,
D. Gentien
,
S. Roman-Roman
,
F. Cruzalegui
,
et al.
22. Biennial Congress of the European Association for Cancer Research , Jul 2012, Barcelone, Spain.
Elsevier Science LTD , European Journal of Cancer, 48 (Suppl. 5), 2012, European Journal of Cancer
Conference poster
hal-01189748v1
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A generic methodological framework for studying single cell motility in high-throughput time-lapse data
Alice Schoenauer Sebag
,
Sandra Plancade
,
Céline Raulet-Tomkiewicz
,
Robert Barouki
,
Jean-Philippe Vert
,
et al.
Journal articles
hal-01246689v1
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Jarid2 Methylation via the PRC2 Complex Regulates H3K27me3 Deposition during Cell Differentiation.
Serena Sanulli
,
Neil Justin
,
Aurélie Teissandier
,
Katia Ancelin
,
Manuela Portoso
,
et al.
Journal articles
hal-01110498v1
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Comparing phylogenetic and statistical classification methods for DNA barcoding
Frédéric Austerlitz
,
Olivier David
,
Brigitte Schaeffer
,
Kevin Bleakley
,
Madalina Olteanu
,
et al.
In Second International Barcode of Life Conference. Consortium for the Barcode of Life , Sep 2007, Taipei, Taiwan
Conference papers
hal-02757822v1
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Effect Of Reproductive Factors And Body Mass Index On The Mutation Localization-Specific Risk Of Breast Cancer In The French National BRCA1/2 Carrier Cohort (GENEPSO)
Julie Lecarpentier
,
Catherine Nogues
,
Emmanuelle Mouret-Fourme
,
Dominique Stoppa-Lyonnet
,
Christine Lasset
,
et al.
Annual meeting of the International Genetic Epidemiology Society , Sep 2011, Heidelberg, Germany. p. 156-157, ref 134,
⟨10.1002/gepi.21604⟩
Conference papers
istex
inserm-00690885v1
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Variation of Breast Cancer Risk in the French National BRCA1/2 Carrier Cohort (GENEPSO)
Julie Lecarpentier
,
Catherine Noguès
,
Emmanuelle Mouret-Fourme
,
Rosette Lidereau
,
Nadine Andrieu
Eighteenth annual meeting of the International Genetic Epidemiology Society , Oct 2009, Kahuku, Hawaii, United States. page 819, 229,
⟨10.1002/gepi.20463⟩
Conference papers
istex
inserm-00610028v1
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Independent Component Analysis Uncovers the Landscape of the Bladder Tumor Transcriptome and Reveals Insights into Luminal and Basal Subtypes
Anne Biton
,
Isabelle Bernard-Pierrot
,
Yinjun Lou
,
Clémentine Krucker
,
Elodie Chapeaublanc
,
et al.
Journal articles
hal-04093036v1
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A structural alignment kernel for protein structures.
Jian Qiu
,
Martial Hue
,
Asa Ben-Hur
,
Jean-Philippe Vert
,
William Stafford Noble
Journal articles
hal-00433578v1
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The pharmacophore kernel for virtual screening with support vector machines.
Pierre Mahé
,
Liva Ralaivola
,
Véronique Stoven
,
Jean-Philippe Vert
Journal articles
hal-00433580v1
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Graph kernels for molecular structure-activity relationship analysis with support vector machines.
Pierre Mahé
,
Nobuhisa Ueda
,
Tatsuya Akutsu
,
Jean-Luc Perret
,
Jean-Philippe Vert
Journal articles
hal-00433584v1
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A Genomic Multiprocess Survey of Machineries that Control and Link Cell Shape, Microtubule Organization, and Cell-Cycle Progression
Veronika Graml
,
Xenia Studera
,
Jonathan L.D. Lawson
,
Anatole Chessel
,
Marco Geymonat
,
et al.
Journal articles
hal-01101880v1
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Toll-like receptor control of glucocorticoid-induced apoptosis in human plasmacytoid pre-dendritic cells (pDC).
Y. Lepelletier
,
R. Zollinger
,
C. Ghirelli
,
F. Raynaud
,
R. Hadj-Slimane
,
et al.
Journal articles
hal-00508701v1
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Efficient peptide-MHC-I binding prediction for alleles with few known binders.
Laurent Jacob
,
Jean-Philippe Vert
Journal articles
hal-00433574v1
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CCL2/CCR2-Dependent Recruitment of Functional Antigen-Presenting Cells into Tumors upon Chemotherapy
Yuting Ma
,
Stephen R Mattarollo
,
Sandy Adjemian
,
Heng Yang
,
Laetitia Aymeric
,
et al.
Journal articles
hal-02047410v1
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ITALICS: an algorithm for normalization and DNA copy number calling for Affymetrix SNP arrays
Guillem Rigaill
,
Philippe Hupé
,
Anna Almeida
,
Philippe La Rosa
,
Jean-Philippe Meyniel
,
et al.
Journal articles
hal-02655786v1
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Designs for evaluating precision medicine trials
Xavier Paoletti
,
Bernard Asselain
,
Christophe Le Tourneau
Pan-cancer Integrative Molecular Portrait Towards a New Paradigm in Precision Medicine , pp.113-131, 2015, 9783319221892.
⟨10.1007/978-3-319-22189-2_8⟩
Book sections
hal-02560954v1
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Identification of chemogenomic features from drug-target interaction networks using interpretable classifiers
Y. Tabei
,
E. Pauwels
,
Véronique Stoven
,
K. Takemoto
,
Y. Yamanishi
Journal articles
hal-03116929v1
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Assessment of algorithms for mitosis detection in breast cancer histopathology images
Mitko Veta
,
Paul J. Van Diest
,
Stefan M. Willems
,
Haibo Wang
,
Anant Madabhushi
,
et al.
Journal articles
hal-01246695v1
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Learning Sparse Penalties for Change-Point Detection using Max Margin Interval Regression
Guillem Rigaill
,
Toby Dylan Hocking
,
Francis Bach
,
Jean-Philippe Vert
ICML 2013 - 30 th International Conference on Machine Learning , Supported by the International Machine Learning Society (IMLS), Jun 2013, Atlanta, United States
Conference papers
hal-00824075v1
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A Meta-Analysis of the Relationship between FGFR3 and TP53 Mutations in Bladder Cancer
Yann Neuzillet
,
Xavier Paoletti
,
Slah Ouerhani
,
Pierre Mongiat-Artus
,
Hany Soliman
,
et al.
Journal articles
hal-01358546v1
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A new approach to integrate toxicity grade and repeated treatment cycles in the analysis and reporting of phase I dose-finding trials
Adélaide Doussau
,
Rodolphe Thiebaut
,
B. Geoerger
,
Patrick Schoffski
,
Anne Floquet
,
et al.
Journal articles
hal-01288869v1
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On learning matrices with orthogonal columns or disjoint supports
Kevin Vervier
,
Pierre Mahé
,
Alexandre d'Aspremont
,
Jean-Baptiste Veyrieras
,
Jean-Philippe Vert
Conference papers
hal-01101875v1
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