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Bioimage Informatics for Phenomics
Thomas Walter
Bioinformatics [q-bio.QM]. Sorbonne Université, 2020
Habilitation à diriger des recherches
tel-02981391v1
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ProDiGe: PRioritization Of Disease Genes with multitask machine learning from positive and unlabeled examples
Fantine Mordelet
,
Jean-Philippe Vert
2011
Preprints, Working Papers, ...
hal-00594774v1
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Tight convex relaxations for sparse matrix factorization
Emile Richard
,
Guillaume Obozinski
,
Jean-Philippe Vert
2014
Preprints, Working Papers, ...
hal-01025959v3
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Scaling ResNets in the Large-depth Regime
Pierre Marion
,
Adeline Fermanian
,
Gérard Biau
,
Jean-Philippe Vert
2022
Preprints, Working Papers, ...
hal-03697725v1
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kernelPSI: a Post-Selection Inference Framework for Nonlinear Variable Selection
Lotfi Slim
,
Clement Chatelain
,
Chloé-Agathe Azencott
,
Jean-Philippe Vert
36th International Conference on Machine Learning (ICML 2019), Jun 2019, Long Beach, CA, United States
Conference papers
hal-02441304v1
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Efficient multi-task chemogenomics for drug specificity prediction
Benoit Playe
,
Chloé-Agathe Azencott
,
Véronique Stoven
Journal articles
hal-01984828v1
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Segmentation of Nuclei in Histopathology Images by deep regression of the distance map
Peter Naylor
,
Marick Lae
,
Fabien Reyal
,
Thomas Walter
IEEE Transactions on Medical Imaging, 2018, pp.1-12
Journal articles
hal-01984033v1
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Classification of gene signatures for their information value and functional redundancy
Laura Cantini
,
Laurence Calzone
,
Loredana Martignetti
,
Mattias Rydenfelt
,
Nils Blüthgen
,
et al.
Journal articles
hal-02129604v1
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martini: an R package for genome-wide association studies using SNP networks
Chloé-Agathe Azencott
,
Héctor Climente-González
2021
Preprints, Working Papers, ...
hal-03122108v1
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A review of the use of time‐varying covariates in the Fine‐Gray subdistribution hazard competing risk regression model
Peter Austin
,
Aurélien Latouche
,
Jason Fine
Journal articles
hal-02349043v1
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Origin, Analytical Characterization, and Use of Human Odor in Forensics
Vincent Cuzuel
,
Guillaume Cognon
,
Isabelle Rivals
,
Charles Sauleau
,
François Heulard
,
et al.
Journal articles
halshs-02524960v1
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The French Early Breast Cancer Cohort (FRESH): A Resource for Breast Cancer Research and Evaluations of Oncology Practices Based on the French National Healthcare System Database (SNDS)
Elise Dumas
,
Lucie Laot
,
Florence Coussy
,
Beatriz Grandal Rejo
,
Eric Daoud
,
et al.
Journal articles
hal-03901737v1
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Supervised Quantile Normalisation
Marine Le Morvan
,
Jean-Philippe Vert
2017
Preprints, Working Papers, ...
hal-01525306v1
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EDEN : An Event DEtection Network for the annotation of Breast Cancer recurrences in administrative claims data
Elise Dumas
,
Anne-Sophie Hamy
,
Sophie Houzard
,
Eva Hernandez
,
Aullène Toussaint
,
et al.
2022
Preprints, Working Papers, ...
hal-03903457v1
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A new protein binding pocket similarity measure based on comparison of 3D atom clouds: application to ligand prediction
Brice Hoffmann
,
Mikhail Zaslavskiy
,
Jean-Philippe Vert
,
Véronique Stoven
2009
Preprints, Working Papers, ...
hal-00402627v2
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Clusterpath An Algorithm for Clustering using Convex Fusion Penalties
Toby Dylan Hocking
,
Armand Joulin
,
Francis Bach
,
Jean-Philippe Vert
28th international conference on machine learning, Jun 2011, United States. pp.1
Conference papers
hal-00591630v1
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Novel Methods for Epistasis Detection in Genome-Wide Association Studies
Lotfi Slim
,
Clement Chatelain
,
Jean-Philippe Vert
,
Chloé-Agathe Azencott
Journal articles
hal-01984919v2
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pyComBat, a Python tool for batch effects correction in high-throughput molecular data using empirical Bayes methods
Abdelkader Behdenna
,
Julien Haziza
,
Chloé-Agathe Azencott
,
Akpéli Nordor
2020
Preprints, Working Papers, ...
hal-03114226v1
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Group Lasso with Overlaps: the Latent Group Lasso approach
Guillaume Obozinski
,
Laurent Jacob
,
Jean-Philippe Vert
[Research Report] 2011, pp.60
Reports
inria-00628498v1
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Biological networks and GWAS: comparing and combining network methods to understand the genetics of familial breast cancer susceptibility in the GENESIS study
Héctor Climente-González
,
Christine Lonjou
,
Fabienne Lesueur
,
Dominique Stoppa-Lyonnet
,
Nadine Andrieu
,
et al.
Journal articles
hal-03114234v1
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Insights for Quantifying the Long-Term Benefit of Immunotherapy Using Quantile Regression
Bassirou Mboup
,
Christophe Le Tourneau
,
Aurélien Latouche
Journal articles
hal-03822479v1
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Block HSIC Lasso: model-free biomarker detection for ultra-high dimensional data
Héctor Climente-González
,
Chloé-Agathe Azencott
,
Samuel Kaski
,
Makoto Yamada
Journal articles
hal-02072349v1
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Asymptotic Results on Adaptive False Discovery Rate Controlling Procedures Based on Kernel Estimators
Pierre Neuvial
Journal of Machine Learning Research, 2013, 14, pp.1423-1459
Journal articles
hal-00460677v2
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ipcwswitch: An R package for inverse probability of censoring weighting with an application to switches in clinical trials
Nathalie Graffeo
,
Aurélien Latouche
,
Christophe Le Tourneau
,
Sylvie Chevret
Journal articles
hal-02349298v1
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Progress and open challenges in extremely high-dimensional medical outcome prediction
Kevin Bleakley
Journées MAS et Journée en l'honneur de Jacques Neveu, Aug 2010, Talence, France
Documents associated with scientific events
inria-00509772v1
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Trajectories, bifurcations and pseudotime in large clinical datasets: applications to myocardial infarction and diabetes data
Sergey E Golovenkin
,
Jonathan Bac
,
Alexander Chervov
,
Evgeny M Mirkes
,
Yuliya V Orlova
,
et al.
Journal articles
hal-02972281v1
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The Weighted Kendall and High-order Kernels for Permutations
Yunlong Jiao
,
Jean-Philippe Vert
35th International Conference on Machine Learning, Jul 2018, Stockholm, Sweden. pp.2314--2322
Conference papers
hal-01717385v1
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A systematic analysis of gene-gene interaction in multiple sclerosis
Lotfi Slim
,
Clément Chatelain
,
Hélène de Foucauld
,
Chloé-Agathe Azencott
Journal articles
hal-03122122v1
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Nonlinear post-selection inference for genome-wide association studies
Lotfi Slim
,
Clément Chatelain
,
Chloé-Agathe Azencott
Conference papers
hal-03122125v1
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Model learning to identify systemic regulators of the peripheral circadian clock
Julien Martinelli
,
Sandrine Dulong
,
Xiao-Mei Li
,
Michèle Teboul
,
Sylvain Soliman
,
et al.
Journal articles
hal-03183579v1
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