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Metric learning pairwise kernel for graph inference
Jean-Philippe Vert
,
Jian Qiu
,
William Noble
2006
Preprints, Working Papers, ...
hal-00108477v1
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EXPERIMENTALLY-GENERATED GROUND TRUTH FOR DETECTING CELL TYPES IN AN IMAGE-BASED IMMUNOTHERAPY SCREEN
Joseph Boyd
,
Zelia Gouveia
,
Franck Perez
,
Thomas Walter
Conference papers
hal-02976141v1
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Statistical methods for deciphering intra-tumor hereterogeneity : challenges and opportunities for cancer clinical management
Judith Abecassis
Bioinformatics [q-bio.QM]. Université Paris sciences et lettres, 2020. English. ⟨NNT : 2020UPSLM065⟩
Theses
tel-03228677v1
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Bioimage Informatics for Phenomics
Thomas Walter
Bioinformatics [q-bio.QM]. Sorbonne Université, 2020
Habilitation à diriger des recherches
tel-02981391v1
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Stability-based comparison of class discovery methods for DNA copy number profiles.
Isabel Brito
,
Philippe Hupé
,
Pierre Neuvial
,
Emmanuel Barillot
PLoS ONE, 2012, 8 (12), pp.e81458
Journal articles
hal-01201580v1
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SVDetect: a tool to identify genomic structural variations from paired-end and mate-pair sequencing data
Bruno Zeitouni
,
Valentina Boeva
,
Isabelle Janoueix-Lerosey
,
Sophie Loeillet
,
Patricia Legoix-Né
,
et al.
Journal articles
inserm-00508372v1
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A new pairwise kernel for biological network inference with support vector machines.
Jean-Philippe Vert
,
Jian Qiu
,
William S Noble
Journal articles
hal-00433573v1
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Supervised reconstruction of biological networks with local models.
Kevin Bleakley
,
Gérard Biau
,
Jean-Philippe Vert
Journal articles
hal-00433575v1
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Classification of microarray data using gene networks.
Franck Rapaport
,
Andrei Zinovyev
,
Marie Dutreix
,
Emmanuel Barillot
,
Jean-Philippe Vert
Journal articles
hal-00433577v1
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An accurate and interpretable model for siRNA efficacy prediction.
Jean-Philippe Vert
,
Nicolas Foveau
,
Christian Lajaunie
,
Yves Vandenbrouck
Journal articles
hal-00433579v1
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Classification of arrayCGH data using fused SVM.
Franck Rapaport
,
Emmanuel Barillot
,
Jean-Philippe Vert
Journal articles
inserm-00293893v1
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ProDiGe: PRioritization Of Disease Genes with multitask machine learning from positive and unlabeled examples
Fantine Mordelet
,
Jean-Philippe Vert
2011
Preprints, Working Papers, ...
hal-00594774v1
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RNF: a general framework to evaluate NGS read mappers
Karel Brinda
,
Valentina Boeva
,
Gregory Kucherov
Journal articles
hal-01220199v2
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Proceedings of the 7th European Conference on Python in Science (EuroSciPy 2014)
Pierre de Buyl
,
Nelle Varoquaux
2014
Books
hal-01584599v1
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Qualitative dynamics semantics for SBGN process description
Adrien Rougny
,
Christine Froidevaux
,
Laurence Calzone
,
Loïc Paulevé
Journal articles
hal-01332679v1
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Tight convex relaxations for sparse matrix factorization
Emile Richard
,
Guillaume Obozinski
,
Jean-Philippe Vert
2014
Preprints, Working Papers, ...
hal-01025959v3
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Learning with Minimal Effort: Leveraging in Silico Labeling for Cell and Nucleus Segmentation
Thomas Bonte
,
Maxence Philbert
,
Emeline Coleno
,
Edouard Bertrand
,
Arthur Imbert
,
et al.
ECCV 2022 Workshops. Lecture Notes in Computer Science, 13804, Springer Nature Switzerland, pp.423-436, 2023, Lecture Notes in Computer Science, 978-3-031-25068-2. ⟨10.1007/978-3-031-25069-9_28⟩
Proceedings
hal-04029154v1
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Scaling ResNets in the Large-depth Regime
Pierre Marion
,
Adeline Fermanian
,
Gérard Biau
,
Jean-Philippe Vert
2022
Preprints, Working Papers, ...
hal-03697725v1
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A new protein binding pocket similarity measure based on comparison of clouds of atoms in 3D: application to ligand prediction.
Brice Hoffmann
,
Mikhail Zaslavskiy
,
Jean-Philippe Vert
,
Véronique Stoven
Journal articles
inserm-00663528v1
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kernelPSI: a Post-Selection Inference Framework for Nonlinear Variable Selection
Lotfi Slim
,
Clement Chatelain
,
Chloé-Agathe Azencott
,
Jean-Philippe Vert
36th International Conference on Machine Learning (ICML 2019), Jun 2019, Long Beach, CA, United States
Conference papers
hal-02441304v1
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Comparing phylogenetic and statistical classification methods for DNA barcoding
Frédéric Austerlitz
,
Olivier David
,
Brigitte Schaeffer
,
Kevin Bleakley
,
Madalina Olteanu
,
et al.
In Second International Barcode of Life Conference. Consortium for the Barcode of Life, Sep 2007, Taipei, Taiwan
Conference papers
hal-02757822v1
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Efficient multi-task chemogenomics for drug specificity prediction
Benoit Playe
,
Chloé-Agathe Azencott
,
Véronique Stoven
Journal articles
hal-01984828v1
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Segmentation of Nuclei in Histopathology Images by deep regression of the distance map
Peter Naylor
,
Marick Lae
,
Fabien Reyal
,
Thomas Walter
IEEE Transactions on Medical Imaging, 2018, pp.1-12
Journal articles
hal-01984033v1
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The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks
Aurélien Naldi
,
Céline Hernandez
,
Nicolas Levy
,
Gautier Stoll
,
Pedro Monteiro
,
et al.
Journal articles
hal-01794294v2
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Asynchronous, complete and distributed garbage collection in the NGrid project
Joannès Vermorel
,
Warith Harchaoui
2005
Preprints, Working Papers, ...
hal-00009571v1
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martini: an R package for genome-wide association studies using SNP networks
Chloé-Agathe Azencott
,
Héctor Climente-González
2021
Preprints, Working Papers, ...
hal-03122108v1
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Meta-Analysis of Esophageal Cancer Transcriptomes Using Independent Component Analysis
Ainur Seisenova
,
Asset Daniyarov
,
Askhat Molkenov
,
Aigul Sharip
,
Andrei Zinovyev
,
et al.
Journal articles
hal-03447487v1
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InDeep: 3D fully convolutional neural networks to assist in silico drug design on protein–protein interactions
Vincent Mallet
,
Luis Checa Ruano
,
Alexandra Moine Franel
,
Michael Nilges
,
Karen Druart
,
et al.
Journal articles
pasteur-04102799v1
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The French Early Breast Cancer Cohort (FRESH): A Resource for Breast Cancer Research and Evaluations of Oncology Practices Based on the French National Healthcare System Database (SNDS)
Elise Dumas
,
Lucie Laot
,
Florence Coussy
,
Beatriz Grandal Rejo
,
Eric Daoud
,
et al.
Journal articles
hal-03901737v1
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Development of chemogenomic approaches for prediction of protein - ligand interactions
Brice Hoffmann
Quantitative Methods [q-bio.QM]. École Nationale Supérieure des Mines de Paris, 2011. English. ⟨NNT : 2011ENMP0074⟩
Theses
pastel-00679718v1
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